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I had power going into the ATX PSU, then I had the 12 volt leads coming out of the PSU that I then was attaching to the wires that were going into the motherboard "power in" ports.
Here are the wires (red arrows) I was connecting to with the PSU live:
		
		
	
	
		
	
If the PSU was on and THEN I connected, the PSU would shut down. If I connected the wires and then powered on the PSU, everything worked fine.
			
			Here are the wires (red arrows) I was connecting to with the PSU live:
If the PSU was on and THEN I connected, the PSU would shut down. If I connected the wires and then powered on the PSU, everything worked fine.