Why did you clean or purge the PGI-9 carts? Were they bad or recovered carts? If they were not, you should not have as you will have created a ton of work for yourself. Readers..listen up. If they are carts were working do not purge or flush. Please.
Assuming that they were recovered and you wanted to refurbish them. What condition were they in? If the pad was dry when you got them, and the spring had expanded then you should also rinse out the ink inside as well..with something known to be safe.
Assuming you used water internally and externally, you should NOT let the pad dry out. Immediately after withdrawing the water and air with the vacuum adapter, put about 3 ml of ink inside with the dribble/stream method. Why this method? because the absorption of the ink will tell a lot about whether the cartridge is functioning properly. With the bellows fully flattened and the spring compressed to the max, the uptake of the ink should be fairly quick. That means a continuous stream of ink will be absorbed as fast as you put it on.
After putting the 3 ml internally. Put the clip back on and shake the cartridge violently for a period. You are now trying to flush out the water that is in there . At the same time, you are to listen to the paddles internally. They should rattle with a distinct sharp sound and not be lazy muted. After doing this and you are sure that the paddles are working properly then you are to immediately remove all the fluid you have inside with the vacuum adapter and discard the fluid. If the sound of the paddles is now good, you are now ready to refill. If not, repeat with ink again.
When refilling again, initially use the slow method because you will again judge the condition of the cartridge by the uptake of ink. When finished, immediately replace the orange clip on the cartridge.
If the cartridges were working properly, pad moist and stored away with the orange clip or just came off the printer, there is NO need to flush as the ink is fully compatible with the Canon ink.
As I and Thrilla keep stating, if you understand how these cartridges work, You should not dry the pads out because doing so will allow the spring and bellows to extend and cause more work. Worse yet, if air gets into the bladder and allows the paddles to stick to the sides, because of the pigment resin, it will be difficult to release them to allow the paddles to function inside. That is why it is important to listen to the rattles.
These are not sponge cartridges so the old ideas do not work here.